rs31310952 SNP Detail

Summary

• ID
  rs31310952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:159270320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGACAGC CCTGATGGGT
  GTCTACTCTG TGCCAGGTAT TGGGCTCTTT TGCTAGCAAT TTATTCTAGC AAGTATTGTT
  TTGTTTCATA ATGATAATTG TTAAGATGCT ACAGAACTGG CTTAACCCAA AAATATAGGT
  CATTGGGAGA TAAGTTTCCA TAAATAGACT CTAAAGAAAA AAATATTTTT AATACACAGC
  R
  AGTGAAGTAT ACGGGATTTC AGTGGGGAGA AGGGATCGTG TGCTTTCCTA GGATCATGAG
  AAGCAATGTG GAGAGCACGC TAGACTTATA ACTTAGAGGG TACAACTTCA TCTGTGTAGG
  TGGATTAGAG ATGCATTATT AAATAGTAAA AAGAAAATAG ATGCTTACAG AACTCGGAGG
  GGAGTTCATT TCCTCTTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49725338	NES13055673	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31310952					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49725338	NES13055673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159270320 () rs orientation: forward

Symbol	Name	Function Class
Rr421534	regulatory region 421534	1412 bp proximal