rs31311516 SNP Detail

Summary

• ID
  rs31311516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180235636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG CAGAGAGCTG GAAGCCGTGC
  R
  ACTTGGAGCA ACACTAATGC CTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45018476	mCV23630731	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss46717216	NES10686991	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A		G	G	G	G		G	A	G	G		G
ss146380468	ENSMUSSNP5509724	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss320159865	CHEV_1_182338202	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31311516					SNP	A	A	A	G	A	G	A	A	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46717216	NES10686991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180235636 () rs orientation: forward

Symbol	Name	Function Class
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr396659	regulatory region 396659	845 bp upstream
Rr424494	regulatory region 424494	within coordinates
Rr424495	regulatory region 424495	784 bp distal
Rr424496	regulatory region 424496	704 bp proximal