rs31312583 SNP Detail

Summary

• ID
  rs31312583
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107375535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGACGTC TCCTGGCACT
  TAAAAAGCAG CAGCCAGCTC CTGACGATGT ATTGCTTGAT GGCAGAAGCC AACCCTATCT
  ATAATTCCTC TGCACCTCAC GTCTCCCCCA CCACCCAACC TAGGCCTCAG GCTCCTCGCT
  GTCCCCATGA AGAGGGCTGA GGGCTCCCTG AGCAAGAAGC TGGTGACTGG AGCTGAGAGC
  W
  GTCAGAACAG GAACTCTTAG GTGTACCTCT GCACTGCCCC AACTCGAATG ACTCAGCCCC
  GGAAACCCCT TGTCTCCTGG TAGGCACCGT ATGAGCAGCG CCAACCAGCA CTAGGGACCC
  TGCGCCAAGA CTTGGAGACC CAGCCCTCAC TTCCAGCTCT TCCACGGAAG CTGAGGCTGG
  TCTTCAGTGG TCAGGTGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45520646	mCV24920040	ABI	CRAMUS_MOUSE	f	SNP		A						T		T
ss46855935	NES10710091	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		A	T	T	T	A	T	A	A	T
ss135584339	ENSMUSSNP5818738	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31312583					SNP	A	A	T	T	T	T	T	T	A	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855935	NES10710091	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107375535 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	1401 bp proximal
Rr582980	regulatory region 582980	1267 bp distal
Rr582981	regulatory region 582981	1432 bp distal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates