rs31312713 SNP Detail

Summary

• ID
  rs31312713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6551627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGACACAG TATCTCATGG AAACTTAAAG AAAAATTTAC
  TCTGGCCTTG GGTTCATGAA ATATAGTTCA CCATCATGGA AAAGTCATGG CAGCAGTACC
  R
  GCTCCTGTCC TTGGTAACAG GAAAGGGAGA CTGTTGATGT CTCAGTCAAT CAGAAATCAG
  GAAGTAGAGA GCTGGGGCCA GAGGCAGGGC TTTGCATTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45018632	mCV24649392	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss148499966	ENSMUSSNP1282389	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31312713					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6551627 () rs orientation: forward

Symbol	Name	Function Class
Rr407511	regulatory region 407511	1312 bp distal
Rr407512	regulatory region 407512	1990 bp proximal
Tssr5834	transcription start site region 5834	1353 bp upstream