rs31312902 SNP Detail

Summary

• ID
  rs31312902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:78961776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTAATACT CTATGTTATT CTTATCCTAG AAACCAGACT
  TATAAAAGAT AGGATTTAGG GCAGTGTCTT TTTGAAGTAT TCTGGGCTGC ACCTTCTTGC
  R
  TTTGTGTGCA GGAACAGGCA GCCAAACATT GTAGCAAGTA ATGTTTTTGG TGTTGATTTT
  TAAAGAGAAC AGATTGTATA CACTGTTAAA ATTGGGTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46512310	mCV24448802	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss134221130	ENSMUSSNP6323955	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325899158	CHEV_X_77163509	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31312902					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:78961776 () rs orientation: forward

Symbol	Name	Function Class
Rr395274	regulatory region 395274	1644 bp upstream
Tssr163724	transcription start site region 163724	285 bp downstream