rs31314058 SNP Detail

Summary

• ID
  rs31314058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191177290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGTGTCT GGAGGGCAGA GTCTGGGGCT CTGAGGTCTG
  CTGCTGAGAG TCCTCTCCCC TCCGAGGAGC ATGCCTATTC TTGACAGCCC ACCCTTTCAA
  Y
  AGCACGTTTA TTCCTCTTGA TTCATTTTGT GCTCAGAAAT GTCATTGCTG TGTGCGGAAT
  CACGTGGGAG TCACCTGTTA GGGAGACTAG AGGCAAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45018639	mCV23930910	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146505940	ENSMUSSNP2013199	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320195293	CHEV_1_193268972	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31314058					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191177290 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	544 bp upstream
Tssr15793	transcription start site region 15793	710 bp downstream