rs31316986 SNP Detail

Summary

• ID
  rs31316986
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70093404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA GAAAGGAGGC TGTCACTGCG
  W
  TTCTAGCCTG GTGTTCCTTT CCTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46512443	mCV22726324	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss134200622	ENSMUSSNP6197971	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss325895426	CHEV_X_68302973	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31316986					SNP	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70093404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22753	CpG island 22753	within coordinates
Gm61915	predicted gene, 61915	within coordinates
Gm61918	predicted gene, 61918	within coordinates
Mamld1	mastermind-like domain containing 1	442 bp upstream
Rr691735	regulatory region 691735	within coordinates
Rr691736	regulatory region 691736	166 bp proximal
Rr691737	regulatory region 691737	284 bp proximal
Tssr161155	transcription start site region 161155	267 bp upstream
Tssr161156	transcription start site region 161156	328 bp upstream
Tssr161157	transcription start site region 161157	362 bp upstream