rs31317330 SNP Detail

Summary

• ID
  rs31317330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG TAAAGAGACG CGGAGAGTGG
  R
  CACTGGTCTC TAGGCCAGGA AAACG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46019655	mCV25048387	ABI	CRAMUS_MOUSE	f	SNP	G	A				A
ss60972635	NES16155333	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A	G	A	G	G	A
ss148469600	ENSMUSSNP5469993	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31317330					SNP	G	A	A	A	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972635	NES16155333	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	540 bp distal
Cpgi18451	CpG island 18451	775 bp proximal
Cpgi18452	CpG island 18452	1607 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	739 bp upstream
Rr155272	regulatory region 155272	926 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	910 bp downstream
Tssr64791	transcription start site region 64791	876 bp downstream
Tssr64792	transcription start site region 64792	838 bp downstream
Tssr64793	transcription start site region 64793	813 bp downstream
Tssr64794	transcription start site region 64794	657 bp downstream
Tssr64795	transcription start site region 64795	853 bp upstream
Tssr64796	transcription start site region 64796	1631 bp upstream