rs31320045 SNP Detail

Summary

• ID
  rs31320045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:54983313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGCGG CCGTGCACGC
  GCCGGAAGGC GGTGCTTTCA GTGAATCCGC CAATCATCAA AGAGCACGGG GGTTGGGCTT
  TGCCACGGGG GTGTGGGGGG AGACCCGCCT CCTCCACTGC TCAGTTGTTC CATGGCCTCT
  GTGGCTTGGT AGGGAAGTAG CATTTTGCGA GTTGACCTTC AGTTAAGTTT ATAGGGACAG
  Y
  GGCCCCTTAA CTGTTCTGTG GTAGTCACTT TTCAAAACGC GTGGTCCCAG CTCACCTCTA
  TCAAAGCTGG TAAAGTTGGA CATTTTTGGA AAGGAGGAAA AATGAAATCA ATCAGGCACC
  TAAATAGCAG TCAGGGACAC CAGTGTTGGT ATGCAGCCTT CGCACTAGAC AATTAGTCAA
  ATCCCTGTTG CTTTGCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47540288	NES11442155	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31320045					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47540288	NES11442155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:54983313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20350	CpG island 20350	59 bp distal
Rr400849	regulatory region 400849	18 bp downstream
Rr663552	regulatory region 663552	within coordinates
Spcs3	signal peptidase complex subunit 3 homolog (S. cerevisiae)	280 bp upstream
Tssr77368	transcription start site region 77368	645 bp downstream
Tssr81305	transcription start site region 81305	915 bp upstream
Tssr81306	transcription start site region 81306	864 bp upstream
Tssr81307	transcription start site region 81307	332 bp upstream
Tssr81308	transcription start site region 81308	271 bp upstream