rs31320048 SNP Detail

Summary

• ID
  rs31320048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:54983401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTGGGG GGAGACCCGC
  CTCCTCCACT GCTCAGTTGT TCCATGGCCT CTGTGGCTTG GTAGGGAAGT AGCATTTTGC
  GAGTTGACCT TCAGTTAAGT TTATAGGGAC AGCGGCCCCT TAACTGTTCT GTGGTAGTCA
  CTTTTCAAAA CGCGTGGTCC CAGCTCACCT CTATCAAAGC TGGTAAAGTT GGACATTTTT
  R
  GAAAGGAGGA AAAATGAAAT CAATCAGGCA CCTAAATAGC AGTCAGGGAC ACCAGTGTTG
  GTATGCAGCC TTCGCACTAG ACAATTAGTC AAATCCCTGT TGCTTTGCTT TCAACAGAGA
  ACCGAACCTC TACTTAAGTT ACGTGTTTTA TACCACAATC CCAAATATTT CCACTTATCC
  AAAATAGGTT GTTGTACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47540291	NES11442156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31320048					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47540291	NES11442156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:54983401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20350	CpG island 20350	147 bp distal
Rr400849	regulatory region 400849	106 bp downstream
Rr663552	regulatory region 663552	within coordinates
Spcs3	signal peptidase complex subunit 3 homolog (S. cerevisiae)	368 bp upstream
Tssr77368	transcription start site region 77368	733 bp downstream
Tssr81305	transcription start site region 81305	1003 bp upstream
Tssr81306	transcription start site region 81306	952 bp upstream
Tssr81307	transcription start site region 81307	420 bp upstream
Tssr81308	transcription start site region 81308	359 bp upstream