rs31320053 SNP Detail

Summary

• ID
  rs31320053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:54983984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAATAAA TGAAATATGT
  AGCAGTTATA GTCAGAGTGG TCTTTAGATG TGTTTAAAAC CTTGGTTATT CAATCTCTCG
  GGTAGCCACA CTGTATTCAG TGAAGGAAGG TTTTAATAAA TAGTTACTGT GCTGCAAGTG
  AGACACAAAA GTATATTGAT CACTTTGTAT AAACCCTACT GAGGTTTATA ACTGAGTAAA
  R
  TTATCAAAAT CAAAGCAGCA GCTTAAATTA TAAAACAGGT ATAAATACTG AGGGATGCTA
  CATAGTGCTA GAGACAAAAT GAGGAAGCCA TGTATGTGGT GAGACAGAAC AAATCAACCC
  ACACACTACC TAGTATTATT ACTATAGAGT AACTTAGAGA AAGGATGCCT CTTGTTACAG
  ATGATGAGTG CCAGGATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47540297	NES11442159	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31320053					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47540297	NES11442159	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:54983984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20350	CpG island 20350	730 bp distal
Rr400849	regulatory region 400849	689 bp downstream
Rr663552	regulatory region 663552	461 bp distal
Spcs3	signal peptidase complex subunit 3 homolog (S. cerevisiae)	951 bp upstream
Tssr77368	transcription start site region 77368	1316 bp downstream
Tssr81305	transcription start site region 81305	1586 bp upstream
Tssr81306	transcription start site region 81306	1535 bp upstream
Tssr81307	transcription start site region 81307	1003 bp upstream
Tssr81308	transcription start site region 81308	942 bp upstream