rs31321620 SNP Detail

Summary

• ID
  rs31321620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158798016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGGTATGTA AGAAGGCAAA AAGAAACCGT GAGCATGTGT
  CAATGCAAAC ATGCACATAT TTTTGTTTTC CAATTTCAAG ACAATGTGTG ACATCTATTT
  R
  CCAAAGTTGA TTTGGGACTA GGCCACAAGG AGTAACCCCT AGATATGGTA CTGGAGAAAG
  TAGAATACAC TCAGGACATT GTTTCACAAT CATTCATGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49726968	NES13051286	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A	G
ss145854642	ENSMUSSNP7097394	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31321620					SNP	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49726968	NES13051286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158798016 () rs orientation: forward

Symbol	Name	Function Class
1600012P17Rik	RIKEN cDNA 1600012P17 gene	within coordinates
Rr25255	regulatory region 25255	1655 bp distal
Tssr9608	transcription start site region 9608	611 bp downstream
Tssr14503	transcription start site region 14503	1964 bp upstream
Tssr14504	transcription start site region 14504	1614 bp upstream
Tssr14505	transcription start site region 14505	929 bp upstream
Tssr14506	transcription start site region 14506	750 bp upstream
Tssr14507	transcription start site region 14507	739 bp upstream
Tssr14508	transcription start site region 14508	697 bp upstream