rs31321622 SNP Detail

Summary

• ID
  rs31321622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158797746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT TCCATAATGC CTTGTCCCAC
  R
  GGATTACAGG GAATCCCAGT TTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss49726970	NES13051284	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs31321622					SNP	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49726970	NES13051284	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158797746 () rs orientation: forward

Symbol	Name	Function Class
1600012P17Rik	RIKEN cDNA 1600012P17 gene	within coordinates
Rr25255	regulatory region 25255	1385 bp distal
Tssr9608	transcription start site region 9608	341 bp downstream
Tssr14503	transcription start site region 14503	1694 bp upstream
Tssr14504	transcription start site region 14504	1344 bp upstream
Tssr14505	transcription start site region 14505	659 bp upstream
Tssr14506	transcription start site region 14506	480 bp upstream
Tssr14507	transcription start site region 14507	469 bp upstream
Tssr14508	transcription start site region 14508	427 bp upstream