rs31322111 SNP Detail

Summary

• ID
  rs31322111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130368523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGAGTTAT TTTAACTTGA GCCCACATAG TCTTTCTTTC
  TTTCTTTTTT CCCCTTGTTC CTAGCAGGCC CTCTAGTGGC AGCTAATGTG AACTTTAGGT
  Y
  CAACACATAA TGTCCGTATG AACTGAAGCC ATTCCACTAT ACTAAAGCAC AGCATTTTTT
  GTTCATAAAA TCGTCTTAAC AACCATAGCC AGAGATCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45521192	mCV24294414	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss135896412	ENSMUSSNP4493734	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31322111					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130368523 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	416 bp proximal
Rr585175	regulatory region 585175	1420 bp distal
Rr585176	regulatory region 585176	within coordinates
Rr585177	regulatory region 585177	1920 bp proximal