rs31322221 SNP Detail

Summary

• ID
  rs31322221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102119716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCAAGAC CTTTATTATG
  CAAAAATCTC AGACATCACA AATAATATGT TTGTTTTCTT AAAGTTAGTG AAGCATACCC
  AAACTAAATT CCTTTAGAGT CGTGATAGTA GAAAAATGTG AATGGCTTAG TGTTAACCTT
  TGTAACTGTC ACTGTCTTTA CTGAGGTGTG ACTCTTTTAG AGTCCAGATG AAGATGCTCA
  Y
  ACCTACAAGG AAGCCAATCT AAGTTTATAG TTCATCGGAG TAATCACAGT TATAAACGAA
  GCCTGAAAAA TCTTCAACCT ACTGTGTTCT GTTGTCCTGA CCGGGGAGAC TATGGAATGC
  TTTGTTTGAA TTTATATCTA CTTGTCAAAG TATAGCAGAG AGAAAGAAAG GTTGTGGGTT
  TGTGGCAAGT GTAGATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39277527	mCV22290653	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146740332	ENSMUSSNP1775191	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31322221					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102119716 () rs orientation: forward

Symbol	Name	Function Class
Lmo7	LIM domain only 7	within coordinates
Rr296718	regulatory region 296718	1284 bp proximal
Tssr126927	transcription start site region 126927	1758 bp upstream
Tssr126928	transcription start site region 126928	1766 bp upstream
Tssr126929	transcription start site region 126929	1847 bp upstream