rs31322236 SNP Detail

Summary

• ID
  rs31322236
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86172159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTACATC ATGGTTGTTG AGATAACAAA GGCCAGCAAA
  GGCTAAAGGT GAGCGTGTCT TAGGTCCTGT CTTGGCAGTT TCCTGAGATT TATCTTTGTA
  M
  ACATAACAAC TTGTCCAAGA TCCAAGTGAC TTTGGGGAGT GGGAGCTGTA GCTATGGAAT
  ATTCCATTGC AGGACAAGGA TTCAGATATG TGGCTGGAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45521341	mCV24949236	ABI	CRAMUS_MOUSE	f	SNP	A	A	A			C		A
ss46731695	NES10758020	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	C		A	A	C		C		C
ss135445651	ENSMUSSNP919688	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss320829444	CHEV_3_86068774	CHEVERUD	SCREENING_POP	f	SNP										A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31322236					SNP	A	A	A	A	C	C	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731695	NES10758020	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86172159 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	1277 bp upstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	1395 bp downstream