rs31322530 SNP Detail

Summary

• ID
  rs31322530
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158795407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATATAAAG GAAGAAAACC ACAAAACCCA CTCCAAGTCA
  ATATTGCTGA CCAGACTGTC TCATGTTGGC AGCTGATAGC ATAGGTTCCC AGTTTTCAAA
  M
  ATAGTCCCTT TTTTAGAGAA GATAAAACTT AAAACAGGCA AAAGCAGAAC TCTCAATTCT
  GATGAGGGAT TTTCACTAAG TGCATTGAAG CCAGAGCATC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49726981	NES13051273	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	A	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31322530					SNP	C	A	C	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49726981	NES13051273	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158795407 () rs orientation: forward

Symbol	Name	Function Class
1600012P17Rik	RIKEN cDNA 1600012P17 gene	within coordinates
Rr25255	regulatory region 25255	705 bp proximal
Tssr9608	transcription start site region 9608	1973 bp upstream
Tssr14503	transcription start site region 14503	641 bp downstream
Tssr14504	transcription start site region 14504	989 bp downstream
Tssr14505	transcription start site region 14505	1670 bp downstream
Tssr14506	transcription start site region 14506	1851 bp downstream
Tssr14507	transcription start site region 14507	1863 bp downstream
Tssr14508	transcription start site region 14508	1906 bp downstream