rs31322631 SNP Detail

Summary

• ID
  rs31322631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113416134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA TAAAACGGAC TGGATTCAAG
  Y
  TGTCATCATT TTGAATATTC TTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46019805	mCV23606273	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss145683899	ENSMUSSNP5227739	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			C
ss322424748	CHEV_7_120960415	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31322631					SNP	T	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113416134 () rs orientation: forward

Symbol	Name	Function Class
Rr653874	regulatory region 653874	within coordinates
Rr653875	regulatory region 653875	1221 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr74335	transcription start site region 74335	80 bp downstream