rs31323825 SNP Detail

Summary

• ID
  rs31323825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160349761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGAGCATT TCAGACTAGA
  ATGCCTCTGA CCTATTTAAA GCTAAAGCTA ATCCACCTAC ACTATTTATA GGAAACCTAA
  GCTTCTACAA TTGTTCTTAG TTTGAGGGAT CCAGGAACAG GTTGGCCTGG CTTTTCAACA
  GTTCTGGTCT CAACTCGTTT CACTCCTTGA GACCTCAAGA GCTATCACCA ACGGCTTTCA
  Y
  TTCATCTGTG CACACCTCTG CACTGGAGCC TGGGATGGAA ATCCCCTTCA TACAGATTCA
  AAGTGTCCTT TATTAATCAG AAATGTTTAT ACACTTATGC AGGATCACAT CTCAATATTT
  AAAACCCAGC TGCCTCCTTC AGGGCTTTTG TATTCTATCT TTCAAGTATC TACAGAAACC
  ACTCTTCCTA TCCTTGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49727711	NES13050739	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31323825					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49727711	NES13050739	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160349761 () rs orientation: forward

Symbol	Name	Function Class
Rabgap1l	RAB GTPase activating protein 1-like	Intron
Rr421675	regulatory region 421675	1153 bp distal