rs31323831 SNP Detail

Summary

• ID
  rs31323831
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160348863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATATGGGA TATTAGGAAA
  AGAACATTTT TTCCTTTCTT AAAATTAACT TTTAGCTCTC AGTTCTCCCT TTGGTTTTCC
  CTCAGAAAAC CTGTAGGAGA GATGTGTAAC TGCAGATAAA CAGGTTTTTT ATATTTCCAG
  TTGTGAGCCT CACCATTAAC AGCTGAGCCA TTTCTACAGC CTAGTGGGAT AGGTTTTAAC
  W
  AGTGTTACCA TTACAATGAT TTAAGTGTCA ATTACACTTA AATGTCAATT AGCTTAGCAA
  GAACAAAGCT CTAAGACTAT GGAGATGACT CGATCCATAA AGCATTTGCT GCGCAAGCAT
  GGGGACCTGA GTTTGTACCT CTAGCACCCA CATAAAAGCT AGGCATACTA TCACATGCTT
  CTAATCCTAG CACACAGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45157085	mCV24556250	ABI	CRAMUS_MOUSE	f	SNP		T	A					T		T
ss49727717	NES13050746	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	T		T	T	T	T	T	T	T	T	T
ss145892977	ENSMUSSNP6622243	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31323831					SNP	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49727717	NES13050746	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160348863 () rs orientation: forward

Symbol	Name	Function Class
Rabgap1l	RAB GTPase activating protein 1-like	Intron
Rr421675	regulatory region 421675	255 bp distal