rs31323940 SNP Detail

Summary

• ID
  rs31323940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:138798976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGACAGAG GGAAAATGGC AGACAGAGTT CCTGAAGCAC
  TTGGGCACTT GCTTACCAAG TGTCAGGGAC ATGGTAGGCG ATAAAGCTGA CAAAGGCCTC
  K
  AGGGTTTGGG ATCTGCGTTC TCAACTTTGA AACTTATTTT GAAAGAACTA ACTGAACGTG
  GGAGGGTTAG AATTAGATTT GGCCCCAGAT CACTACCTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46020012	mCV23696888	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss145976059	ENSMUSSNP2502219	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322467787	CHEV_7_146404959	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31323940					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:138798976 () rs orientation: forward

Symbol	Name	Function Class
Lrrc27	leucine rich repeat containing 27	within coordinates
Rr657517	regulatory region 657517	1944 bp distal
Rr657518	regulatory region 657518	66 bp proximal
Rr657519	regulatory region 657519	1169 bp proximal
Tssr69706	transcription start site region 69706	1514 bp upstream