rs31324548 SNP Detail

Summary

• ID
  rs31324548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88499833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT GTTACCAAGG AAAGGGTGGA
  R
  GAGCTGGTCA AATATCCTGC TGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45521166	mCV23479693	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss135470494	ENSMUSSNP6953734	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320835711	CHEV_3_88396448	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31324548					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88499833 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	336 bp downstream
Rr397772	regulatory region 397772	270 bp downstream
Rr397773	regulatory region 397773	813 bp upstream
Rr579834	regulatory region 579834	974 bp distal
Rr579835	regulatory region 579835	410 bp distal
Tssr29977	transcription start site region 29977	564 bp upstream
Tssr29978	transcription start site region 29978	592 bp upstream
Tssr29979	transcription start site region 29979	643 bp upstream
Tssr29980	transcription start site region 29980	1567 bp upstream