rs31324627 SNP Detail

Summary

• ID
  rs31324627
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160347476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAACAAATA CAAGATGTCT TTTTAAAGAC
  AGAAAGATGA CATGGAATGA TAGTGTGATG AATGAACTTT CCTTCATTGT GCCATATTTT
  ACTGTGAAAT AAAAGTCCTA TTTCGTGAAA GTCTAGCAAA ACAAAATTTC AAGGCACCCA
  S
  TACAAATGCT AACGGGACCC AGGCAGGGCT GACTGACTAC TTTATAGTCA CCTCATCATA
  GAGGGGCATT TAATTAAATC TGAATATATG TAAGATATGT TCTGGATTTC TCCTTTAAAA
  AAAGTGAACT TCAGGCTAAG TAAGTGTAAT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45030054	mCV24556278	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					G		C
ss49727724	NES13050853	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	C	C		G	C	G	C		C	G	C	C		G
ss145892959	ENSMUSSNP6634374	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320079606	CHEV_1_162450037	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31324627					SNP	C	C	C	G	C	C	C	G	G	C	G	C	G	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49727724	NES13050853	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160347476 () rs orientation: forward

Symbol	Name	Function Class
Rabgap1l	RAB GTPase activating protein 1-like	Intron
Rr421674	regulatory region 421674	981 bp distal
Rr421675	regulatory region 421675	834 bp proximal