rs31325636 SNP Detail

Summary

• ID
  rs31325636
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATATAA GGTTTCTGGT
  ATCTTAAAAA GCAATACCGA TGAGATTTTA TGTTGTTGCG GCTGCTGCTG CTGAAGCACT
  GTTCAGAGTA ATTTACATTA CTTTACAAGG TTTTATTGAA AATATTTAAA AACTGTTTTG
  GTTGTTCCCT CAGCATACAT ATTGCTGTTT TATTGGACGG TGCTTTTATA TTTCTTTCAA
  K
  ATTGGCACAT ATGAGATACA CTTGTCCTAA ATATTATGCA GCTACAGGTT TTACAAGTAT
  AACAATAGCA ATTTCATTTG ATTTGAGGGA ATTTATGGTT CTATTATTTG TGCTTGAGTT
  CTGAGATATG CCTTCCCCCC CCCCCCCCAC ACACACACAC ACACACAATT TTTAACCTAA
  AACCAGAGTT TCTCTTTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46020618	mCV22978519	ABI	CRAMUS_MOUSE	f	SNP		T					G		G
ss61031653	NES16093385	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	G		G	G	G		G	G		G
ss145293398	ENSMUSSNP1581879	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
ss322314345	CHEV_7_97313400	CHEVERUD	SCREENING_POP	f	SNP											T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31325636					SNP	G	T	T	T	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031653	NES16093385	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814098 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1816 bp downstream
Tssr67721	transcription start site region 67721	1733 bp downstream
Tssr67722	transcription start site region 67722	795 bp downstream
Tssr67723	transcription start site region 67723	615 bp upstream
Tssr67724	transcription start site region 67724	1162 bp upstream
Tssr67725	transcription start site region 67725	1207 bp upstream
Tssr67726	transcription start site region 67726	1220 bp upstream
Tssr67727	transcription start site region 67727	1284 bp upstream