rs31325909 SNP Detail

Summary

• ID
  rs31325909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17846879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG TTAGACGGAC ACTCACCCTA
  M
  CCCCCAGGAA AACAACAGAC TTTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45521237	mCV22663581	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss134653794	ENSMUSSNP5891701	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss320673722	CHEV_3_17692715	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31325909					SNP	C	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17846879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	1122 bp proximal
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Rr573848	regulatory region 573848	1948 bp distal
Rr573849	regulatory region 573849	421 bp distal
Rr573850	regulatory region 573850	within coordinates
Rr573851	regulatory region 573851	515 bp proximal
Tssr28485	transcription start site region 28485	1193 bp upstream
Tssr28486	transcription start site region 28486	1274 bp upstream
Tssr28487	transcription start site region 28487	1300 bp upstream
Tssr28488	transcription start site region 28488	1581 bp upstream