rs31326444 SNP Detail

Summary

• ID
  rs31326444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAAATCA GGAACAAGCA
  TATTTTCTGA AATTGGGCCT TGTGGTATAT GCCTATTAAT CCCAGTACCA GAGGGTTTGG
  AGCAGGAATA TTAGAAACTC ATCAGACACC ATTCTCTTAG CTATGTAATG AGTTGGAGGC
  CAGCCTCAGG TACATGAGAC CTATATCAAA ACAAACCATA GGTAGACTAG GAGTGAAGCT
  R
  ATGTTTTCCC AGTACTTGGA AGGCTGAGGC AGAAGGATCA CAAGTCTGAG GCAACTTGGG
  CTACTTAGTT TTTTGCTAGA CTGGACAACA GAGAGGAATA CATCAAAAAA CAAAACAAAA
  CAAACAAACA AAAACCCAGA GCCAGAGGTC TGGCTGTGGT GACACTTAAC TCCAGCAGTC
  CTGAGGCAGA GGCAGGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46019779	mCV25048352	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148469560	ENSMUSSNP2840887	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31326444					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1746 bp distal
Cpgi18450	CpG island 18450	1354 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1481 bp upstream
Gm71808	predicted gene, 71808	1159 bp downstream
Rr155270	regulatory region 155270	1465 bp distal
Rr155271	regulatory region 155271	265 bp distal
Rr167137	regulatory region 167137	1664 bp distal
Rr167138	regulatory region 167138	535 bp proximal
Tssr64790	transcription start site region 64790	1476 bp upstream
Tssr64791	transcription start site region 64791	1506 bp upstream
Tssr64792	transcription start site region 64792	1543 bp upstream
Tssr64793	transcription start site region 64793	1573 bp upstream
Tssr64794	transcription start site region 64794	1708 bp upstream