rs31327833 SNP Detail

Summary

• ID
  rs31327833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70349910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAAGACC GAACAGCCAG
  GAGAGGAATA AAGACACAGA AGTGTGCAAG CAGATGAGTA AGAAAGACGC AGGTTATCCT
  CGATTTTCCG TTCCGTTTGT TTACTTCCAA TTTTTATCTT TGAAGCCTTT TTTTACACGT
  AAGTTTTCAC TTTCACATCT ATTTATATAT TTTTTTTCTT TAAAAAGGGA TGCAAAATTC
  W
  ATACTCACTG GCCAGCAAAT CCCTAACATC TCTGAGAGAT CAAATATAGT CAAGGGAAAG
  AGGACCACAG CAAAGTCTGA GAGATTGAAC ATAGTCAAGG GAAAGAGGGC CACAGTAAAG
  TCTGAGAGAT TGAACATAGT CAAGGGAAAG AGGACCACAG TAAAGTCAGG AGGGTGAAAT
  GCGTGTCCAC AGCCAAGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39278130	mCV24338941	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss62449839	NES17257065	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31327833					SNP	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62449839	NES17257065	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70349910 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494844	regulatory region 494844			1357 bp distal
Rr494845	regulatory region 494845			1375 bp distal