rs31327969 SNP Detail

Summary

• ID
  rs31327969
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153364330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACC ATGGTGCACT GACCTACAGG
  S
  CATAAGACAT AAAGTAAAAT GAATC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45019534	mCV25366628	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31327969					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153364330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	689 bp distal
Dhx9	DExH-box helicase 9	924 bp upstream
Rr396394	regulatory region 396394	763 bp downstream
Rr396395	regulatory region 396395	514 bp upstream
Rr420682	regulatory region 420682	987 bp distal
Rr420684	regulatory region 420684	1049 bp distal
Rr420685	regulatory region 420685	434 bp distal
Rr420686	regulatory region 420686	336 bp proximal
Tssr9459	transcription start site region 9459	1663 bp downstream
Tssr9460	transcription start site region 9460	761 bp downstream
Tssr14270	transcription start site region 14270	922 bp upstream
Tssr14271	transcription start site region 14271	903 bp upstream
Tssr14272	transcription start site region 14272	894 bp upstream