rs31329280 SNP Detail

Summary

• ID
  rs31329280
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19294333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACTTTG GCCCCATCGA
  AAAAGCAAGC TCTTTCCAGG CTTCAATGCT GCCTTCATAA TCATCATGGG TTTAGGAGCG
  CTCACTCTCA CCAGGCACAG TTCATGTGTG ATGTCACTCA GTCTCTGGCA GACCCTGGAC
  CACTGCTCCT GTCAGTCACT CTGGGGGAGG GTGGCTCTGA GGCTCAGGGG AGCCAGGCAA
  M
  TTCTCAGTGG TTGCAAAAGA CAGCAAGTGG GAAAGTCAGA ATTTGACCCA GCTAGCCTTT
  CTTTTCCCTC TTTTCTTTCT TTCTATAGTG AAACAGGGCT TCCCCATGCA GTTCAAGCCC
  CCCCTAGAAT GTCTACTCTA TGATCCAGCC TTAGCCTCTA AGCGCTGGGC TCACAGCTGC
  AGACAGCCAC ACCAGGTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46020373	mCV25052328	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss148478804	ENSMUSSNP5073901	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31329280					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19294333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	729 bp proximal
Ppp1r37	protein phosphatase 1, regulatory subunit 37	within coordinates
Rr643186	regulatory region 643186	1584 bp distal
Rr643187	regulatory region 643187	1144 bp distal
Tssr70928	transcription start site region 70928	1714 bp downstream
Tssr70929	transcription start site region 70929	1760 bp downstream
Tssr70930	transcription start site region 70930	1793 bp downstream
Tssr70931	transcription start site region 70931	1969 bp downstream