rs31329664 SNP Detail

Summary

• ID
  rs31329664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54412243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAT TTGGAGCGGG AACCAAATTA
  W
  CAGTAAAACC AAGTAAGTAA AGGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39278143	mCV23057148	ABI	CRAMUS_MOUSE	f	SNP			A					T
ss62393461	NES17236826	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	A		T	A	A	A		A
ss139557181	ENSMUSSNP223928	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss324635230	CHEV_14_54794461	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31329664					SNP	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393461	NES17236826	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54412243 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	1175 bp distal
Rr492148	regulatory region 492148	1568 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	1485 bp upstream
Traj42	T cell receptor alpha joining 42	987 bp upstream
Traj43	T cell receptor alpha joining 43	within coordinates
Traj44	T cell receptor alpha joining 44	1036 bp downstream
Traj45	T cell receptor alpha joining 45	1896 bp downstream
Tssr125558	transcription start site region 125558	1252 bp downstream
Tssr125559	transcription start site region 125559	1232 bp downstream
Tssr125560	transcription start site region 125560	1196 bp downstream
Tssr125561	transcription start site region 125561	1182 bp downstream
Tssr125562	transcription start site region 125562	385 bp downstream
Tssr125563	transcription start site region 125563	160 bp downstream
Tssr125564	transcription start site region 125564	79 bp upstream
Tssr125565	transcription start site region 125565	168 bp upstream
Tssr125566	transcription start site region 125566	1188 bp upstream
Tssr125567	transcription start site region 125567	1422 bp upstream
Tssr125568	transcription start site region 125568	1441 bp upstream
Tssr125569	transcription start site region 125569	1467 bp upstream
Tssr125570	transcription start site region 125570	1485 bp upstream
Tssr128543	transcription start site region 128543	1871 bp downstream