rs31329911 SNP Detail

Summary

• ID
  rs31329911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191820618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TTATGCTTGT AACGGTTACC
  Y
  TTCTCCTTTC AGAGAGGGGA TACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45020245	mCV25166223	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146513843	ENSMUSSNP2582293	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T		C
ss320197028	CHEV_1_193960200	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31329911					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191820618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	146 bp proximal
Gm10516	predicted gene 10516	580 bp upstream
Gm37055	predicted gene, 37055	371 bp upstream
Rcor3	REST corepressor 3	within coordinates
Rr29207	regulatory region 29207	within coordinates
Tssr15823	transcription start site region 15823	1258 bp downstream
Tssr15824	transcription start site region 15824	1573 bp downstream
Tssr15825	transcription start site region 15825	1634 bp downstream
Tssr15826	transcription start site region 15826	1677 bp downstream