rs31330500 SNP Detail

Summary

• ID
  rs31330500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:118782746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC AGCCACTCAT CTGCAGCGCT
  R
  GGAGCTGCCT GGGTAGGGAG GACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46019983	mCV23657747	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss145804438	ENSMUSSNP5747182	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31330500					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118782746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	643 bp proximal
Cpgi19632	CpG island 19632	1757 bp proximal
Gm73654	predicted gene, 73654	1389 bp upstream
Gpr139	G protein-coupled receptor 139	Intron
Rr381384	regulatory region 381384	1573 bp upstream
Rr654599	regulatory region 654599	1704 bp distal
Rr654600	regulatory region 654600	1070 bp proximal
Rr654601	regulatory region 654601	1400 bp proximal
Tssr74477	transcription start site region 74477	1004 bp downstream
Tssr74478	transcription start site region 74478	1025 bp downstream
Tssr74479	transcription start site region 74479	1075 bp downstream