rs31330793 SNP Detail

Summary

• ID
  rs31330793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTTGGGC CTGGTTGGTG GTAGTACATG
  TCCTTCAGAT TCTGCTGGGA CCTGCTGAGA AGACTGGAAT GGAGAGAGCC AGCTGCCCCC
  TAACTTAGTT TCCTTTTAGT TCTCATCACC CCctgagccc caccttgtgc cagtcactct
  R
  tgtgggctgg tggacataaa tgttcaagct gcagtacaaa cttggtcctg atcttatgga
  tcttttgatc tagtgagcaa gccagacaCA GCAGCTCGCC ATGACCACAG TTTCTAAGCC
  CGGGGAGAAT TCCAATAATC CCCTCTACCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45020721	mCV24740892	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss145547948	ENSMUSSNP6590404	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss319993818	CHEV_1_137732161	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31330793					SNP	A	A	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763322 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	721 bp distal
Rr419293	regulatory region 419293	1157 bp distal
Rr419294	regulatory region 419294	280 bp proximal
Rr419295	regulatory region 419295	840 bp proximal
Rr419296	regulatory region 419296	1308 bp proximal
Tnnt2	troponin T2, cardiac	770 bp upstream
Tssr9005	transcription start site region 9005	796 bp upstream