rs31330920 SNP Detail

Summary

• ID
  rs31330920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184469286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACAGGCT TCAGACAGCA
  AGCATCAGTC ACATCTCGGA ACTTTATAGC ACTGAAGCAC ACCCATTTGC AGTGAAGACG
  TGCCCCACAA GGGTAGAAAC TGAGCCACTG GACACACTAG TTAACGTTTT GTTCATTCTC
  AGGTATGTGC TCTTTAGCTT CCGGAGAGAG AGCTAGCCAC ATGAGCTCTG GTTGTGGTTG
  Y
  TAAATGATTG AAACTGAATG GTTTATTGCT AAGGGGAGAG AAGGGAATGC AGATATAATA
  AATTACTCCA CATTGAAAAC AAACCTGCCA CCCAGGAGAC AGGACAGCCA TGCCAAGGGA
  CGACCATACA ATACAAAAGG GGGATTGAGA AGGATTTTTC CAAGCTGCTC TATGCTGCTG
  CAGGAAGGGA CCTAAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45019963	mCV24764088	ABI	CRAMUS_MOUSE	f	SNP		T	T				C
ss60355363	NES15858855	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	C		C	C	C	C	C	T	C	T	C
ss146419481	ENSMUSSNP6154736	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31330920					SNP	C	T	T	C	T	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60355363	NES15858855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184469286 () rs orientation: forward

Symbol	Name	Function Class
Gm34342	predicted gene, 34342	within coordinates
Rr425268	regulatory region 425268	1015 bp distal
Rr425269	regulatory region 425269	723 bp proximal
Rr425270	regulatory region 425270	986 bp proximal
Tssr10590	transcription start site region 10590	1680 bp downstream