rs31331252 SNP Detail

Summary

• ID
  rs31331252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:125872606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT TTGAAGAATA AAGACACGTA
  R
  CTATCATCTC CCAAAGACCA AGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46020968	mCV24858348	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145871777	ENSMUSSNP51154	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322450387	CHEV_7_133416948	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31331252					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125872606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19689	CpG island 19689			110 bp distal
Rr368426	regulatory region 368426			1533 bp downstream
Rr655453	regulatory region 655453			805 bp distal
Sbk1	SH3-binding kinase 1			Intron
				mRNA-UTR
Tssr69002	transcription start site region 69002			1010 bp downstream
Tssr69003	transcription start site region 69003			991 bp downstream
Tssr69004	transcription start site region 69004			979 bp downstream
Tssr69005	transcription start site region 69005			960 bp downstream
Tssr69006	transcription start site region 69006			942 bp downstream
Tssr69007	transcription start site region 69007			910 bp downstream
Tssr69008	transcription start site region 69008			847 bp downstream
Tssr69009	transcription start site region 69009			825 bp downstream
Tssr69010	transcription start site region 69010			639 bp downstream
Tssr69011	transcription start site region 69011			576 bp downstream