rs31331629 SNP Detail

Summary

• ID
  rs31331629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122342239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAT CTAGTCGGGA AGAGCCTCAC
  Y
  AACCAGGAGC TGGCTACCCA GAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39278538	mCV22559886	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss147010807	ENSMUSSNP4005391	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss324857941	CHEV_14_122504049	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31331629					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122342239 () rs orientation: forward

Symbol	Name	Function Class
A330035P11Rik	RIKEN cDNA A330035P11 gene	within coordinates
Cpgi6887	CpG island 6887	76 bp proximal
Cpgi6888	CpG island 6888	1919 bp proximal
Gm56752	predicted gene, 56752	100 bp upstream
Rr296792	regulatory region 296792	within coordinates
Rr404313	regulatory region 404313	within coordinates
Tssr127313	transcription start site region 127313	174 bp upstream
Tssr127314	transcription start site region 127314	296 bp upstream
Tssr130316	transcription start site region 130316	1007 bp downstream