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rs31331629 SNP Detail
Summary
  • ID
    rs31331629
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:122342239 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTAAT CTAGTCGGGA AGAGCCTCAC
    Y
    AACCAGGAGC TGGCTACCCA GAGTT                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss39278538 mCV22559886 ABI CRAMUS_MOUSE f SNP T T C C C
ss147010807 ENSMUSSNP4005391 ENSEMBL ENSEMBL_Sanger f SNP T C C
ss324857941 CHEV_14_122504049 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs31331629 SNP T T C C C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:122342239 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A330035P11Rik RIKEN cDNA A330035P11 gene within coordinates
Cpgi6887 CpG island 6887 76 bp proximal
Cpgi6888 CpG island 6888 1919 bp proximal
Gm56752 predicted gene, 56752 100 bp upstream
Rr296792 regulatory region 296792 within coordinates
Rr404313 regulatory region 404313 within coordinates
Tssr127313 transcription start site region 127313 174 bp upstream
Tssr127314 transcription start site region 127314 296 bp upstream
Tssr130316 transcription start site region 130316 1007 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory