TTAAT CTAGTCGGGA AGAGCCTCAC Y AACCAGGAGC TGGCTACCCA GAGTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39278538 | mCV22559886 | ABI | CRAMUS_MOUSE | f | SNP | T | T | C | C | C | ||
ss147010807 | ENSMUSSNP4005391 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | C | ||||
ss324857941 | CHEV_14_122504049 | CHEVERUD | SCREENING_POP | f | SNP | C | T | |||||
SNP Consensus Information | ||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs31331629 | SNP | T | T | C | C | C | C | T |
Location: Chr14:122342239 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
A330035P11Rik | RIKEN cDNA A330035P11 gene | within coordinates | ||||||
Cpgi6887 | CpG island 6887 | 76 bp proximal | ||||||
Cpgi6888 | CpG island 6888 | 1919 bp proximal | ||||||
Gm56752 | predicted gene, 56752 | 100 bp upstream | ||||||
Rr296792 | regulatory region 296792 | within coordinates | ||||||
Rr404313 | regulatory region 404313 | within coordinates | ||||||
Tssr127313 | transcription start site region 127313 | 174 bp upstream | ||||||
Tssr127314 | transcription start site region 127314 | 296 bp upstream | ||||||
Tssr130316 | transcription start site region 130316 | 1007 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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