rs31332199 SNP Detail

Summary

• ID
  rs31332199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16187186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGAGACAG GTCAGTGGCA GGGGCCGGGG TCGTTCGCGC
  TACAAGGAGA GGGGTTTCAA TGTGCACGTG GGAGTGGGTG GCCAGAGTAA GGCAAGCATC
  Y
  GCTGGGAACA GGGCCTGTGC TCAGCGGGGG CAGCTTCCTC ATGTGAGCGC AGGGAACCGG
  TGTTGGGGGT TGGAGATTTT GCAGCCTGGC CGCATAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46021890	mCV22944367	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss148386753	ENSMUSSNP4645198	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss322110708	CHEV_7_17038610	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31332199					SNP	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16187186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	within coordinates
Cpgi18378	CpG island 18378	1748 bp proximal
Rr400123	regulatory region 400123	343 bp downstream
Rr642666	regulatory region 642666	841 bp distal
Rr642667	regulatory region 642667	472 bp distal
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	293 bp downstream
Tssr64614	transcription start site region 64614	230 bp downstream