rs31334540 SNP Detail

Summary

• ID
  rs31334540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151826015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAGTCAG GAAGCAGGCT
  CTGGTCACTG TGACCTTCTC GCAGAGACCC TGGGAAAACA GCTTTAAGTT TAGAATGACT
  GTGGGGATTG GATGGTTTTT TTTTTGCTTA TAAAAGTAGA TGGGAGAGAT GGCTCAGGGG
  ATAACAGCAC TTCTATTTAA GTATGAAGAG CTTAGTTCAA ATCCCCAGCA CCTACATAAG
  R
  AAGCCAAGCA TGGCTACACA GGGTTGGGGG ACAGAGACAG GCAGAGGACA GGAGCTCCAT
  GACGAGCGAG CCTAGCTGAA ACTGTGAGCT TTGGGTTCAG TGAGAGACCC TGGGCTAAGA
  AACAAGGCAG AGTGTATAAG AGATACTCAC TGTCCTCCTC TGGTCTCCAT AAGTAAACCA
  CACTCATATG AACGTTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45523792	mCV24210719	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss136100952	ENSMUSSNP7018314	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss321028151	CHEV_3_151783342	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31334540					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151826015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			122 bp distal
Rr587461	regulatory region 587461			1194 bp proximal
Tssr1098	transcription start site region 1098			264 bp upstream
Tssr32394	transcription start site region 32394			58 bp downstream