rs31334573 SNP Detail

Summary

• ID
  rs31334573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30730653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATATATAT ATATATATAT ATATTTTTTT TTTTTTTTTT
  TTGAGACAGA TCTCTCACTG AGCCTGGCCT ATTTTTCCCA TAGACTAGCT TGCCATTGTA
  Y
  CCCCTTCCTC AATGCTCTGC CTACAGGTGT GAGCTCCCAC AGCTGGCTCT TTTGTTTGCT
  TTTTGAGACA AGGTTCCTCT GTGTAGCCCT GGCTGTTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss46021817	mCV22838282	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148696715	ENSMUSSNP5234864	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss322138552	CHEV_7_31816247	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31334573					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30730653 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	1500 bp downstream
Rr644976	regulatory region 644976	290 bp distal
Rr644977	regulatory region 644977	560 bp proximal
Tssr65829	transcription start site region 65829	1625 bp upstream