rs31335252 SNP Detail

Summary

• ID
  rs31335252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86121661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTACAGGG GAATGCCAGG
  GCCAGGAAGC AGGAGTGGGT GGGTTGGGGA GCAGGGTAGG GGAAGGGTAT AGGGGGCTTT
  CAGGATACCA TTTGAAATGT AAATGAAGAA AATATCAAAT AAAAAAATGG CTATGGGAAA
  AATAAAAAAA CAGAAAAATA AAGTTCTTTT TTAACTTCCA CCCATCTGTA AAGAAAGCTC
  R
  CAGGCAGAAG GAAATGAGTG TGTGGAGGTC GCTGACTAGA CTGGTTTCTA CTCAAGCTAG
  TCTTACCTCA TTTTCCAGGA CCGCAGTTCA TAGAATTTTC TTTCTTTTAA GCATTTACAG
  TTTGAGTCAT GTAACTAGAA ATAGATCATC AGTACTTCTA AATGTTACTT TCTGTATTAG
  TATTTTCTCA ACTAGTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45523431	mCV24506460	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss46731455	NES10760195	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	G	A		G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31335252					SNP	A	A	A	G	G	G	A	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731455	NES10760195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86121661 () rs orientation: forward

Symbol	Name	Function Class
Gm66037	predicted gene, 66037	within coordinates
Rr397748	regulatory region 397748	within coordinates