rs31335624 SNP Detail

Summary

• ID
  rs31335624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30252819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGC CGTGCTTCAG CTCCTTTACC
  R
  GGTTTCTCTG CTCCGGGACG CCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss46021428	mCV25394913	ABI	CRAMUS_MOUSE	f	SNP	G	G
ss148682306	ENSMUSSNP1969494	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322135213	CHEV_7_31338413	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31335624					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30252819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	743 bp distal
Cpgi18809	CpG island 18809	within coordinates
Cpgi18810	CpG island 18810	832 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Mir9769	microRNA 9769	490 bp downstream
Proser3	proline and serine rich 3	1095 bp upstream
Rr400242	regulatory region 400242	902 bp downstream
Rr644846	regulatory region 644846	1138 bp distal
Rr644847	regulatory region 644847	1703 bp distal
Rr644848	regulatory region 644848	632 bp distal
Rr644849	regulatory region 644849	116 bp distal
Rr644850	regulatory region 644850	86 bp proximal
Tssr65779	transcription start site region 65779	830 bp downstream
Tssr65780	transcription start site region 65780	122 bp downstream
Tssr65781	transcription start site region 65781	85 bp downstream
Tssr65782	transcription start site region 65782	1378 bp upstream
Tssr65783	transcription start site region 65783	1453 bp upstream
Tssr65784	transcription start site region 65784	1477 bp upstream
Tssr65785	transcription start site region 65785	1529 bp upstream
Tssr65786	transcription start site region 65786	1547 bp upstream
Tssr65787	transcription start site region 65787	1641 bp upstream
Tssr71787	transcription start site region 71787	1078 bp upstream
Tssr71788	transcription start site region 71788	1019 bp upstream
Tssr71789	transcription start site region 71789	1271 bp downstream
Tssr71790	transcription start site region 71790	1383 bp downstream