rs31335683 SNP Detail

Summary

• ID
  rs31335683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132797269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCACCCA CAGCAAAAGC CTGCGGTGAA TGTGGGGCTG
  GCAAGACTCT CAAGGGCTGC GAGCCGTCAC CGGTCCCACC CTGGCCTCCA AGCCCAGCCC
  Y
  GCCGACCCCT GAGGGCGAGC GCGGATCTCA GGAGGCGGCG GGGGGACGAG CGGCCCGAGC
  GCCCTCTTTA CCTGGTCGCA GGGGCGCGGC CAGGCAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45523241	mCV25027923	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss135916552	ENSMUSSNP5485631	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31335683					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132797269 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			within coordinates
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Ints12	integrator complex subunit 12			347 bp upstream
Rr398028	regulatory region 398028			313 bp downstream
Rr398029	regulatory region 398029			249 bp upstream
Rr398030	regulatory region 398030			1518 bp upstream
Rr585500	regulatory region 585500			within coordinates
Rr585501	regulatory region 585501			307 bp proximal
Rr585502	regulatory region 585502			343 bp proximal
Rr585503	regulatory region 585503			515 bp proximal
Rr585504	regulatory region 585504			1385 bp proximal
Tssr31768	transcription start site region 31768			319 bp upstream
Tssr31769	transcription start site region 31769			336 bp upstream
Tssr31770	transcription start site region 31770			378 bp upstream
Tssr31771	transcription start site region 31771			415 bp upstream
Tssr31772	transcription start site region 31772			1062 bp upstream
Tssr35744	transcription start site region 35744			228 bp downstream
Tssr35745	transcription start site region 35745			256 bp downstream
Tssr35746	transcription start site region 35746			290 bp downstream
Tssr35747	transcription start site region 35747			521 bp downstream
Tssr35748	transcription start site region 35748			537 bp downstream
Tssr35749	transcription start site region 35749			870 bp downstream