rs31336179 SNP Detail

Summary

• ID
  rs31336179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38938994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCGAGGC AGGGGAATAA TCTGAGTGCG GTTGGTGGTG
  TGTGACACTT TAAAAAAATC AAATTTAAAC TGCATTTTAT TTATTTCTAT TTTCTTATAG
  Y
  TTTTCTCCCC CCCCCAGGCC AAAATCGAAA CCAAACGTTA TTAGATTTCC TTTGGCTAGA
  GAATGTCAAG GGGAGAAAAG CCCCACAGGG GATCAAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45524590	mCV25414925	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss134846125	ENSMUSSNP3628279	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320724090	CHEV_3_38783767	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31336179					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38938994 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	137 bp proximal
Gm56780	predicted gene, 56780	844 bp upstream
Gm65329	predicted gene, 65329	within coordinates
Rr575715	regulatory region 575715	1528 bp distal
Rr575716	regulatory region 575716	1820 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	351 bp distal
Rr575719	regulatory region 575719	691 bp proximal
Rr575720	regulatory region 575720	1257 bp proximal
Rr575721	regulatory region 575721	1605 bp proximal
Tssr28930	transcription start site region 28930	467 bp upstream
Tssr28931	transcription start site region 28931	838 bp upstream
Tssr28932	transcription start site region 28932	865 bp upstream
Tssr28933	transcription start site region 28933	897 bp upstream
Tssr28934	transcription start site region 28934	998 bp upstream
Tssr28935	transcription start site region 28935	1031 bp upstream
Tssr28936	transcription start site region 28936	1043 bp upstream