rs31337266 SNP Detail

Summary

• ID
  rs31337266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129856522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGA GCCCTGCTAT TTTTGCTATA
  Y
  CTTCTCTCTT CTGTGCTCTC CCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45522767	mCV25394811	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135891473	ENSMUSSNP7035999	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320964119	CHEV_3_129765791	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31337266					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129856522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	1488 bp distal
Rr585124	regulatory region 585124	1977 bp distal
Rr585125	regulatory region 585125	1981 bp distal
Rr585126	regulatory region 585126	1476 bp distal
Sec24b	SEC24 homolog B, COPII coat complex component	1320 bp upstream
Tssr35658	transcription start site region 35658	1843 bp upstream
Tssr35659	transcription start site region 35659	1365 bp upstream
Tssr35660	transcription start site region 35660	1288 bp upstream