rs31337387 SNP Detail

Summary

• ID
  rs31337387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75416089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAC CTGATTGATA CTTCTACCTC
  R
  GAACCGTTTG GAGAAGGGTG GCCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39279278	mCV22627422	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss51533155	NES14628186	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	G		G	G	A	A		G	G	A	G		A
ss324673322	CHEV_14_75578456	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31337387					SNP	A	A	A	G	A	A	G	A	G	G	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533155	NES14628186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75416089 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	within coordinates
Rr404213	regulatory region 404213	1667 bp downstream
Rr404214	regulatory region 404214	1042 bp upstream
Rr404215	regulatory region 404215	1994 bp upstream
Tssr4479	transcription start site region 4479	1084 bp downstream
Tssr126625	transcription start site region 126625	1852 bp downstream
Tssr126626	transcription start site region 126626	1827 bp downstream
Tssr126627	transcription start site region 126627	1745 bp downstream
Tssr126628	transcription start site region 126628	1495 bp downstream
Tssr126629	transcription start site region 126629	804 bp downstream
Tssr126630	transcription start site region 126630	783 bp downstream
Tssr126631	transcription start site region 126631	929 bp upstream
Tssr126632	transcription start site region 126632	1154 bp upstream
Tssr126633	transcription start site region 126633	1576 bp upstream
Tssr129770	transcription start site region 129770	1967 bp upstream
Tssr129771	transcription start site region 129771	213 bp upstream
Tssr129772	transcription start site region 129772	608 bp downstream