rs31338022 SNP Detail

Summary

• ID
  rs31338022
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36054807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGGCAGT ACCCCTGAGT
  CACCTCGGCT GCAGCAGCAG GATCGGGACC CGTCGCAACT GGTTCCTGTC CACCGCAGCC
  AACAACGCCG CCGCCGCCAT CTCCGCGCTG TTCTGCTGGA TTCCAAAAGC TGCTTGGCTT
  ATTCTTGAAA GCGTCCCTCC CTGCGCAAGC TTCTTGTCCC CGATCCGCCA CCGTAGCTCC
  S
  AAGAGCAAGT AGGCGTCTCC GCAAGAGCCA ATCACAAAAC TGGGTGTTTC AAGGTACCGA
  TTGGCTGATT GGACCATGTG CCTGGGGGGT GGGGAGTGAA CTGTGAGGGG CTGGGCTCCA
  TCTGGAGGGG CGGGGCCAGG TTTTTTTTTT TTTCTTTTTT TTTTTTTTTA GCACAGAGCA
  TGAGAGGAAA ATGCACAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss45524122	mCV24305395	ABI	CRAMUS_MOUSE	f	SNP		C	G			G	G
ss51452902	NES14433073	PERLEGEN	MM_PANEL2	f	SNP	C			C	C			G	G	G	G
ss134776683	ENSMUSSNP3723182	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31338022					SNP	C	C	G	C	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452902	NES14433073	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36054807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	within coordinates
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	within coordinates
Rr397641	regulatory region 397641	within coordinates
Rr575296	regulatory region 575296	735 bp distal
Rr575297	regulatory region 575297	213 bp distal
Rr575298	regulatory region 575298	10 bp proximal
Rr575299	regulatory region 575299	112 bp proximal
Tssr28858	transcription start site region 28858	218 bp downstream
Tssr33012	transcription start site region 33012	50 bp upstream
Tssr33013	transcription start site region 33013	11 bp upstream
Tssr33014	transcription start site region 33014	within coordinates
Tssr33015	transcription start site region 33015	4 bp downstream