rs31338659 SNP Detail

Summary

• ID
  rs31338659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37535359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTTGTTGT CTTTTCTGAT ATATAACTAA AGTTTCAAGG AAATAAGGGA TACAATAATA
  CTTTTTCTGA TTACATTGTT GTAAACAAGG TCTCTTTGAA CCTTATTTCA CAAAATCACA
  AATGAAGTAG AATTTTAAAA TTGTCCATAG TAGTAAGTAA TAATATCTTC TGTTTACAAG
  CACTTACTAA GAGATGAGCT CATTGGTCAT GTTTTCTCTC TCTCTTTTTA AAGAAACTTG
  TTTTTAAGAT TTATTTATTT ATTTATATGA ATATACTACA GCTGTCTTCA GACACCCACT
  R
  GAAGATCAGA TCCCATTACA GATGGTTGTG AGCCACCATG TGGTTGCTGG AAATTGAACT
  CAGGACCTGT GGAAGAGCAG TCAGTCACAG ACCAAGGAGT CAGGGGCTCG TCCGAAAGCC
  GCCTTGGCCC AATGTAGGTG AAGAGCCCGG CCCGGGGCCC GAGGTGGGAT CCCGAGGCCT
  CTCCAGTCCG CCGAGGGAGG GCGCACCACC GGCCCGTCTC GCCCGCCGCG CCGGGAAGGT
  GGAGCACGAG CGTATGCTTT AGGACCCGAA AGATAGTGAA GTATGCCTGG GCAGGGCGAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45524038	mCV24337022	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss134806671	ENSMUSSNP5555255	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31338659					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37535359 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	within coordinates
Cpgi13098	CpG island 13098	209 bp proximal
Rr575489	regulatory region 575489	62 bp proximal
Rr575490	regulatory region 575490	196 bp proximal
Tssr28903	transcription start site region 28903	143 bp upstream
Tssr28904	transcription start site region 28904	206 bp upstream
Tssr28905	transcription start site region 28905	260 bp upstream
Tssr28906	transcription start site region 28906	349 bp upstream