rs31338749 SNP Detail

Summary

• ID
  rs31338749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65544434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACT AACTAAGCCC TTCATGAATA
  Y
  ACTTCAGCCC AGTCTCTGTA CAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45523172	mCV22851873	ABI	CRAMUS_MOUSE	f	SNP	C	T			T		C
ss50965386	NES13945789	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T		C		C	T	C	T	C
ss135252847	ENSMUSSNP4925033	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31338749					SNP	C	T	C	T	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965386	NES13945789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65544434 () rs orientation: forward

Symbol	Name	Function Class
Gm65444	predicted gene, 65444	1590 bp downstream
Rr577715	regulatory region 577715	782 bp distal
Rr577716	regulatory region 577716	305 bp proximal
Rr577717	regulatory region 577717	1905 bp proximal