rs31338817 SNP Detail

Summary

• ID
  rs31338817
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:161159451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGAGAA AATCAGGCAT
  TGAGAAAAAT CTCTTGCCAG CCAACAAATA GGTACTTTAT CACAAAGTGC ATGCTAAGAA
  ATGCAGCCAG AAGGTACCCT AGTTCTGTTG GTGGTGATGG GAAAAGGTCT AGACTCTTTT
  ACTTTATCCA AAAAGGTTTG CTCATCACCC ACTCAACTGT GCAATTTGTT TCCAAAACTT
  W
  TATCTCACAT TCTCACTCCT CAGGTTCATG AGATGAACTG GGACTGTTTG GTAAGTGTGG
  TGGCCTGAGC TTGAAGAAAT GCCTGTATGA TCTGTTCTAC TTTCTACTTT CTCTTTTATG
  ATGGCAAGCC CATTTCCTAT CAATTCAGAG CAGACTTCCC ACCACCACCC GCCGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47042259	NES11154364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31338817					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47042259	NES11154364	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:161159451 () rs orientation: forward

Symbol	Name	Function Class
Tssr164501	transcription start site region 164501	983 bp upstream