rs31339047 SNP Detail

Summary

• ID
  rs31339047
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12771009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGAGCACC TTAAACCTGA GGTTTTCTAT CTCTAGTCAT
  TATCTCCACT CACTACTGTT TATCTGTCCA CCGCAATTCA AGGACCATGA CACCGGCCCC
  S
  CAACACTAAG TCACCCCTTC TCATCAACCA CCCACCTCCA CTGTCCTTCC TCGTCTCCAT
  CTTATTACAA GCCCAAGATC CCATCTCATC CTTGAGATT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46021475	mCV23259839	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	G
ss148342887	ENSMUSSNP964913	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31339047					SNP	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12771009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18334	CpG island 18334	1963 bp distal
Cpgi18335	CpG island 18335	257 bp proximal
Gm71833	predicted gene, 71833	896 bp upstream
Rr400106	regulatory region 400106	1131 bp upstream
Rr642444	regulatory region 642444	1785 bp distal
Rr642445	regulatory region 642445	406 bp proximal
Rr642446	regulatory region 642446	563 bp proximal
Rr642447	regulatory region 642447	907 bp proximal
Rr642448	regulatory region 642448	1181 bp proximal
Tssr64535	transcription start site region 64535	592 bp upstream
Tssr64536	transcription start site region 64536	914 bp upstream
Tssr70649	transcription start site region 70649	1616 bp upstream
Tssr70650	transcription start site region 70650	1547 bp upstream
Tssr70651	transcription start site region 70651	420 bp upstream
Tssr70652	transcription start site region 70652	577 bp downstream
Tssr70653	transcription start site region 70653	602 bp downstream
Tssr70654	transcription start site region 70654	739 bp downstream
Tssr70655	transcription start site region 70655	751 bp downstream
Tssr70656	transcription start site region 70656	880 bp downstream
Tssr70657	transcription start site region 70657	1119 bp downstream
Tssr70658	transcription start site region 70658	1229 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	within coordinates